PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05509.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YC
Protein Properties Length: 138aa    MW: 15808 Da    PI: 10.1919
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05509.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.99.3e-187911497
      NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
               ++  + e+P  rikki+k d+d+k++ aea  l+s++ elf+  l+ rs   a e+kr+ +k   i aav+r + + dfl+d  p
  PK05509.1  7 EETIRPEIPTGRIKKIMKLDKDIKKVNAEALLLISRSTELFLRFLAERSAEVAIEKKRKIVKLEHIRAAVKRHQpTSDFLLDSLP 91
               55556789***************************************************************976489*****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-20577IPR009072Histone-fold
SuperFamilySSF471133.52E-18694IPR009072Histone-fold
PfamPF008084.9E-181376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MADEEKEETI RPEIPTGRIK KIMKLDKDIK KVNAEALLLI SRSTELFLRF LAERSAEVAI  60
EKKRKIVKLE HIRAAVKRHQ PTSDFLLDSL PLPPQPSDKQ PSDRNHSRNV AEKPVPVGTR  120
RIDDFFSKSA NETPIEIX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514923.11e-63PREDICTED: negative cofactor 2 complex subunit alpha
RefseqXP_015900875.11e-63PREDICTED: nuclear transcription factor Y subunit gamma-like
RefseqXP_015894354.11e-63PREDICTED: nuclear transcription factor Y subunit gamma-like
TrEMBLB9RMF41e-63B9RMF4_RICCO; DNA binding protein, putative
STRINGPOPTR_0001s13970.19e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-29nuclear factor Y, subunit C13